Uploaded Shape Data

Number of Curve Points 

                

              

            

          

          

            

              

                
                

                  
                  
                

                

                  

                

              

            

            

              

                

                  
Uploaded Phylogeny

                

              

              

              

                

                  

                    
                  

                

                

              

            

          

          

            

              

                
                

                  
                  
                

                

                  

                

              

            

            

              

                

                  
Uploaded Trait Data

                

              

              

              

                

                  

                    

                      

                        Select Column(s):
                      

                    

                  

                  

                    

                      

                        
                        

                          

                            
                          

                        

                      

                    

                  

                

                

                  

                  

                    

                      

                        

                      

                    

                    

                      

                        

                      

                    

                    

                      

                        

                      

                    

                  

                  

                    

                      

                        

                          Data Type:
                        

                        

                          

                          

                          

                            Transformation:
                          

                        

                      

                    

                    

                      

                        

                          
                          

                            

                              
                            

                            

                              
                            

                          

                        

                        

                        

                          

                            
                            

                              

                                
                              

                              

                                
                              

                              

                                
                              

                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
                            

                              

                                
                              

                              

                                
                              

                            

                          

                          

                          

                            

                              
                              

                                

                                  
                                

                                

                                  
                                

                                

                                  
                                

                              

                            

                          

                        

                      

                      

                        

                          

                            

                              
                              

                                

                                  
                                

                                

                                  
                                

                              

                            

                            

                            

                              

                                
                                

                                  

                                    
                                  

                                  

                                    
                                  

                                  

                                    
                                  

                                

                              

                            

                          

                        

                      

                    

                  

                  

                  

                

                

              

            

          

        

      

      

        

          
          

            

            

            

            

            

            

            

            

            

            

            

            

          

        

        
        

          
          

            

              

                

                  

                  

                    

                      

                    

                    

                    

                    

                      

                        
                          
                          Export Plot
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                    

                  

                  

                  

                

                

                  
                

              

            

            

              

                
                

                  
                

              

            

            

              

              

                

                  

                    
Raw Imported LMs

                    

                  

                

                

                  

                    
                    

                    

                      

                        

                          

                            

                              
                            

                          

                        

                      

                    

                    

                      

                        

                          

                            
                          

                        

                      

                    

                    

                    

                      
Dropped Specimens

                      

                    

                    

                    

                    

                      
Missing Landmarks to Estimate

                      

                    

                    

                    

                      
Semilandmark Matrix

                      

                    

                    

                    

                      
                        
                        Export GPA Code
                      
                    

                  

                

                

                  

                    

                      

                        
Aligned LMs

                      

                    

                    

                      

                        LMs Not Yet Aligned
                      

                    

                    

                      

                    

                  

                

              

            

          

        

      

      

        

          
          

            

            

            

            

            

            

            

            

            

            

            

            

          

        

        
        

          

            

              

              

              

                

                  
                    
                    Export Plot
                  
                

                

                  
                    
                    Export Code
                  
                

              

              

            

            

            

              

                

              

              
            

            

              

                

              

              
            

            

              

                

              

              
            

            

              

                

              

              
            

            
          

          

            
          

        

      

      

        

          
          

            

            

            

            

            

            

            

            

            

            

            

            

          

        

        
        

          
          

            

              

                

                  

                  

                    

                      

                        
Module Visualization

                      

                    

                    

                    

                      

                        

                      

                    

                    

                      

                        
                          
                          Export Modularity Visualization
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                  

                  

                  

                    

                      

                        
Degree of Modularity

                      

                    

                    

                    

                      

                        

                      

                      

                        

                      

                    

                    

                      

                        
                          
                          Export Modularity Plot
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                  

                  

                  

                    

                      

                        

                          
Evolutionary Rate Variation Between Modules

                        

                      

                      

                      

                        

                          

                        

                        

                          

                        

                      

                      

                        

                          
                            
                            Export Rate Plot
                          
                        

                        

                          
                            
                            Export Code
                          
                        

                      

                    

                  

                

                

                  
                

              

            

            

              

                

                  

                  

                    

                      

                        
Global Integration

                      

                    

                    

                    

                      

                        

                      

                    

                    

                      

                        
                          
                          Export Global Integration Plot
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                  

                  

                  

                    

                      

                        
Integration Between Modules (defined in 'Modularity' tab)

                      

                    

                    

                    

                      

                        

                      

                      

                        

                          

                        

                      

                    

                    

                      

                        
                          
                          Export Integration Test Plot
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                    

                  

                  

                  

                

                

                  
                

              

            

            

              

                

                  

                  

                    

                      

                        
Symmetry of Shape Variation

                      

                    

                    

                    

                      

                      
                        
Define symmetry analysis parameters in 'Settings', then press 'Calculate'.

                      
                    

                    
                    

                  

                  

                  

                    

                      

                        

                          
Landmark Side Assignment Visualization

                        

                      

                      

                      

                      

                      

                        

                          
                            
                            Export Landmark Sides Plot
                          
                        

                        

                          
                            
                            Export Code
                          
                        

                      

                    

                  

                  

                

                

                  
                

              

            

            

              

                

                  

                  

                    

                      

                        

                      

                      

                        

                      

                    

                    

                      

                        
                          
                          Export Signal Plot
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                    

                  

                

                

                  
                

              

            

          

        

      

      

        

          
          

            

            

            

            

            

            

            

            

            

            

            

            

          

        

        
        

          
          

            

              

                

                  

                  

                    

                      

                    

                  

                  

                  

                    

                      

                        
Results:

                      

                    

                    

                      

                        
Model Fit Output

                      

                    

                    

                      

                        

                      

                    

                    

                      

                        
ANOVA Table

                      

                      

                        

                          
Procrustes Group Variances

                        

                      

                      

                        

                          
Evolutionary Rates (sigma_d)

                        

                      

                    

                    

                      

                        

                      

                      

                        

                          

                        

                      

                      

                        

                          

                        

                      

                    

                    

                      

                        
                          
                          Export ANOVA Results
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                      
                      
                    

                  

                  

                    

                      

                        

                          
Pairwise Results:

                        

                      

                      

                        

                          
Pairwise ANOVA Table

                        

                        

                          

                            
Pairwise Disparity Table

                          

                        

                        

                          

                            
Pairwise Rates Table

                          

                        

                      

                      

                        

                          

                        

                        

                          

                            

                          

                        

                        

                          

                            

                          

                        

                      

                      

                        

                          
                            
                            Export Pairwise ANOVA Results
                          
                        

                        
                        
                      

                    

                  

                  

                  

                

                

                  
                

              

            

            

              

                

                  

                  

                    

                      

                    

                  

                  

                  

                  

                  

                    

                      
                        
                        Export Allometry Plot
                      
                    

                    

                      
                        
                        Export Code
                      
                    

                  

                  

                  

                

                

                  
                

              

            

            

              

                

                  

                  

                    

                      

                    

                  

                  

                    

                      

                    

                  

                  

                    

                      

                        

                      

                    

                  

                  

                  

                    

                      

                        
Results:

                      

                    

                    

                      

                        
Model Fit Output

                      

                    

                    

                      

                        

                      

                    

                    

                      

                        
ANOVA Table

                      

                    

                    

                      

                        

                      

                    

                    

                      

                        
                          
                          Export Results
                        
                      

                      

                        
                          
                          Export Code
                        
                      

                    

                  

                

                

                  
                

              

            

            

              

                

                  

                  

                    

                      

                    

                  

                  

                  

                    
                  

                  

                

                

                  
                

              

            

          

        

      

      

        

          
          

            

            

            

            

            

            

            

            

            

            

            

            

          

        

        
        

          
          

            

              

              

                

                  

                    
Part 1: Data Input

                  

                

                

                

                  

                

                

                

                  

                    
                      
                      Export Demo TPS File
                    
                    
                      
                      Export Demo Phylogeny File
                    
                    
                      
                      Export Demo Trait File
                    
                  

                

                

                

                  
Updates since tutorial recording:

                   
  • Demo files available for all file uploads (see buttons above)
    • 
                   
  • Download code buttons now pull all necessary info; no extra step needed to download data in current state
    • 
                   
  • Instructions differ slightly, more information on various pages
    • 
                   
    
                
    
              
    
              
    
                
    
                  
    
                    
    Part 2: Data Prep
    
                  
    
                
    
                
    
                
    
                  
    
                
    
              
    
              
    
                
    
                  
    
                    
    Part 3: Morphospace and Warp Grids
    
                  
    
                
    
                
    
                
    
                  
    
                
    
              
    
              
    
                
    
                  
    
                    
    Part 4: Shape Patterns
    
                  
    
                
    
                
    
                
    
                  
    
                
    
                
    
                
    
                  
    
                    
                      
                      Export Demo Symmetry Files
                    
                  
    
                
    
                
    
                
    
                  
    Updates since tutorial recording:
    
                   
  • Various bugs fixed
    • 
                   
  • Certain options only available after Calculate is pressed
    • 
                   
  • Clear Symmetry Settings button now available
    • 
                
    
              
    
              
    
                
    
                  
    
                    
    Part 5: Linear Models
    
                  
    
                
    
                
    
                
    
                  
    
                
    
                
    
                
    
                  
    Updates since tutorial recording:
    
                   
  • Various bugs fixed
    • 
                   
  • Convex Hulls available for Allometry Tab plot
    • 
                
    
              
    
              
    
                
    
                  
    
                    
    Part 6: Extras